Fix merge conflict. #6
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| name: wdl-check | ||
| on: | ||
| push: | ||
| pull_request: | ||
| workflow_dispatch: | ||
| jobs: | ||
| miniwdl_check: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: 3.9 | ||
| - name: Install miniwdl | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip3 install miniwdl | ||
| - name: Run miniwdl | ||
| run: | | ||
| EXITCODE=0 | ||
| echo "Checking WDL files using \`miniwdl check\`." | ||
| files=$(find . -name '*.wdl') | ||
| for file in $files; do | ||
| echo " [***] $file [***]" | ||
| miniwdl check "$file" | ||
| EXITCODE=$(($? || EXITCODE)) | ||
| done | ||
| exit $EXITCODE | ||
| womtool_check: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: 3.9 | ||
| - name: Install Cromwell and Womtool | ||
| run: | | ||
| conda update -n base -c defaults conda | ||
| conda install -c conda-forge cromwell | ||
| - name: Validate wdls with Womtool | ||
| run: | | ||
| EXITCODE=0 | ||
| echo "Checking WDL files using \`womtool validate\`." | ||
| files=$(find . -name '*.wdl') | ||
| for file in $files; do | ||
| echo " [***] $file [***]" | ||
| $CONDA/bin/womtool validate "$file" | ||
| EXITCODE=$(($? || EXITCODE)) | ||
| done | ||
| exit $EXITCODE | ||
| sprocket-lint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Update Rust | ||
| run: rustup update nightly && rustup default nightly | ||
| - name: Install sprocket | ||
| - run: cargo install sprocket | ||
| - name: Validate wdls with Sprocket | ||
| run: | | ||
| EXITCODE=0 | ||
| echo "Checking WDL files using \`sprocket lint\`." | ||
| files=$(find . -name '*.wdl') | ||
| for file in $files; do | ||
| echo " [***] $file [***]" | ||
| $CONDA/bin/womtool validate "$file" | ||
| EXITCODE=$(($? || EXITCODE)) | ||
| done | ||
| exit $EXITCODE | ||
| lint: | ||
| runs-on: ubuntu-22.04 | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Update Rust | ||
| run: rustup update nightly && rustup default nightly | ||
| - name: Install clippy | ||
| run: rustup component add clippy | ||
| - run: cargo clippy --all-features -- --deny warnings | ||
