Repositories list

• NeuRGI

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• FAScore

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• DEMINERS

  Public
  Python

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Jan 5, 2025Jan 5, 2025

• MA-ARDS

  Public
  R

  •0•1•0•0•Updated Dec 11, 2024Dec 11, 2024

• r-scATS

  Public
  An R package for quantifying alternative transcription start site (ATS) in 5' single-cell RNA-seq data

  0•0•0•0•Updated Aug 6, 2024Aug 6, 2024

• Malarialipidmetabolism

  Public
  R

  •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

• SCAPE

  Public
  Single Cell Alternative Polyadenylation using Expectation-maximization

  Python

  •

  MIT License

  •2•7•11•0•Updated Mar 15, 2024Mar 15, 2024

• AANanopore

  Public
  R

  •0•0•0•0•Updated Jan 9, 2024Jan 9, 2024

• T_cells_stemness

  Public
  Shell

  •0•0•0•0•Updated Dec 13, 2022Dec 13, 2022

• AANanoporeR

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Oct 25, 2022Oct 25, 2022

• scATS

  Public
  Single cell ATS

  Python

  •0•0•0•0•Updated Apr 7, 2022Apr 7, 2022

• Neuron

  Public
  During brain development, neural stem cells (NSCs) undergo multiple fate-switches to generate various neuronal subtypes and glial cells, exhibiting distinct transcriptomic profiles at different stages. Despite the extensive transcriptomic characterization of human and mouse brain cells at bulk and single-cell levels, full-length transcriptomic d…

  R

  •1•2•0•0•Updated Jul 9, 2021Jul 9, 2021

• hemato

  Public
  Short-read and long-read RNA sequencing of mouse haematopoietic stem cells at bulk and single-cell levels

  Shell

  •2•1•0•0•Updated Jun 2, 2021Jun 2, 2021

• inferCC

  Public
  Lung cancer 10X analysis

  R

  •2•11•0•0•Updated Dec 30, 2020Dec 30, 2020

• MeDAS

  Public
  MeDAS: a Metazoan Developmental Alternative Splicing database

  HTML

  •0•1•1•0•Updated Sep 10, 2020Sep 10, 2020

• SPaISO-Seq

  Public
  0•0•0•0•Updated Sep 3, 2020Sep 3, 2020

• 40Tcells

  Public
  Paired rRNA-depleted and polyA-selected RNA sequencing from primary CD4 T cell of 40 healthy individuals with multi-omics data

  HTML

  •0•4•0•0•Updated Jul 14, 2020Jul 14, 2020

• Rscript_for_BeadChip

  Public
  0•0•0•0•Updated Jun 4, 2020Jun 4, 2020

• COVID-19

  Public
  Effect of genetic variants in COVID-19

  R

  •

  MIT License

  •2•4•0•0•Updated May 30, 2020May 30, 2020

• scrna

  Public
  R

  •2•1•0•0•Updated Jul 31, 2019Jul 31, 2019

• UCB_Splicing

  Public
  0•0•0•0•Updated Nov 16, 2018Nov 16, 2018

• vcfscripts

  Public
  This is a bash shell script for genotypes outputting through vcf files based on 1000 Genomes Project using VCFtools.

  Shell

  •1•0•0•0•Updated Sep 18, 2018Sep 18, 2018

• ggsashimi

  Public
  Command-line tool for the visualization of splicing events across multiple samples

  Python

  •

  GNU General Public License v3.0

  •42•1•0•0•Updated Feb 28, 2018Feb 28, 2018

• RNA_Seq_protocol

  Public
  RNA-Seq protocol of HISAT2-StringTie-Ballgown

  Shell

  •1•1•0•0•Updated Aug 10, 2017Aug 10, 2017