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    3 repositories

    • pysam

      Public
      Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
      pythonbioinformaticsngshtslib
      Cython
      •
      MIT License
      •276•797•273•13•Updated Oct 30, 2024Oct 30, 2024

    • pysam2

      Public
      [WORK IN PROGRESS]: Pysam2 is a module for Python 3.6 or newer for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib v2 C-API, the same one that powers samtools, bcftools, and tabix.
      Python
      •
      MIT License
      •0•9•1•1•Updated Mar 16, 2020Mar 16, 2020

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•1•0•0•Updated Mar 13, 2017Mar 13, 2017