Check failed cycles and samples for bedbase #309
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| name: Check failed cycles and samples for bedbase | |
| on: | |
| schedule: | |
| # run every 2d day at 11:00 | |
| - cron: '0 11 1/2 * *' | |
| workflow_dispatch: | |
| inputs: null | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [ "3.10" ] | |
| os: [ ubuntu-latest ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install package | |
| run: python -m pip install . | |
| - name: Check 1 cycle before | |
| run: geopephub run-checker --target bedbase --period 2 --cycle-count 1 | |
| env: | |
| POSTGRES_DB: ${{ secrets.POSTGRES_DB }} | |
| POSTGRES_HOST: ${{ secrets.POSTGRES_HOST }} | |
| POSTGRES_PASSWORD: ${{ secrets.POSTGRES_PASSWORD }} | |
| POSTGRES_PORT: ${{ secrets.POSTGRES_PORT }} | |
| POSTGRES_USER: ${{ secrets.POSTGRES_USER }} | |
| - name: Check 2 cycle before | |
| run: geopephub run-checker --target bedbase --period 2 --cycle-count 2 | |
| env: | |
| POSTGRES_DB: ${{ secrets.POSTGRES_DB }} | |
| POSTGRES_HOST: ${{ secrets.POSTGRES_HOST }} | |
| POSTGRES_PASSWORD: ${{ secrets.POSTGRES_PASSWORD }} | |
| POSTGRES_PORT: ${{ secrets.POSTGRES_PORT }} | |
| POSTGRES_USER: ${{ secrets.POSTGRES_USER }} | |
| - name: Check 3 cycle before | |
| run: geopephub run-checker --target bedbase --period 2 --cycle-count 3 | |
| env: | |
| POSTGRES_DB: ${{ secrets.POSTGRES_DB }} | |
| POSTGRES_HOST: ${{ secrets.POSTGRES_HOST }} | |
| POSTGRES_PASSWORD: ${{ secrets.POSTGRES_PASSWORD }} | |
| POSTGRES_PORT: ${{ secrets.POSTGRES_PORT }} | |
| POSTGRES_USER: ${{ secrets.POSTGRES_USER }} | |
| - name: Check 4 cycle before | |
| run: geopephub run-checker --target bedbase --period 2 --cycle-count 4 | |
| env: | |
| POSTGRES_DB: ${{ secrets.POSTGRES_DB }} | |
| POSTGRES_HOST: ${{ secrets.POSTGRES_HOST }} | |
| POSTGRES_PASSWORD: ${{ secrets.POSTGRES_PASSWORD }} | |
| POSTGRES_PORT: ${{ secrets.POSTGRES_PORT }} | |
| POSTGRES_USER: ${{ secrets.POSTGRES_USER }} | |
| - name: Check 5 cycle before | |
| run: geopephub run-checker --target bedbase --period 2 --cycle-count 5 | |
| env: | |
| POSTGRES_DB: ${{ secrets.POSTGRES_DB }} | |
| POSTGRES_HOST: ${{ secrets.POSTGRES_HOST }} | |
| POSTGRES_PASSWORD: ${{ secrets.POSTGRES_PASSWORD }} | |
| POSTGRES_PORT: ${{ secrets.POSTGRES_PORT }} | |
| POSTGRES_USER: ${{ secrets.POSTGRES_USER }} |