Check failed cycles and samples for bedbase #116
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Check failed cycles and samples for bedbase | |
| on: | |
| schedule: | |
| # run every 2d day at 11:00 | |
| - cron: '0 11 1/2 * *' | |
| workflow_dispatch: | |
| inputs: null | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [ "3.10" ] | |
| os: [ ubuntu-latest ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dev dependencies | |
| run: if [ -f requirements/requirements.txt ]; then pip install -r requirements/requirements.txt; fi | |
| - name: Check 1 cycle before | |
| run: python metageo_pephub/main.py --target bedbase --function run_checker --host ${{ secrets.HOST }} --db ${{ secrets.DB }} --user ${{ secrets.USER }} --password ${{ secrets.PASSWORD }} --period 2 --cycle-count 1 | |
| - name: Check 2 cycle before | |
| run: python metageo_pephub/main.py --target bedbase --function run_checker --host ${{ secrets.HOST }} --db ${{ secrets.DB }} --user ${{ secrets.USER }} --password ${{ secrets.PASSWORD }} --period 2 --cycle-count 2 | |
| - name: Check 3 cycle before | |
| run: python metageo_pephub/main.py --target bedbase --function run_checker --host ${{ secrets.HOST }} --db ${{ secrets.DB }} --user ${{ secrets.USER }} --password ${{ secrets.PASSWORD }} --period 2 --cycle-count 3 | |
| - name: Check 4 cycle before | |
| run: python metageo_pephub/main.py --target bedbase --function run_checker --host ${{ secrets.HOST }} --db ${{ secrets.DB }} --user ${{ secrets.USER }} --password ${{ secrets.PASSWORD }} --period 2 --cycle-count 4 | |
| - name: Check 5 cycle before | |
| run: python metageo_pephub/main.py --target bedbase --function run_checker --host ${{ secrets.HOST }} --db ${{ secrets.DB }} --user ${{ secrets.USER }} --password ${{ secrets.PASSWORD }} --period 2 --cycle-count 5 |