Queue and upload BEDbase projects #145

	name: Queue and upload BEDbase projects

	on:
	schedule:
	# run every 2d day at 10:00
	- cron: '0 10 1/2 * *'
	workflow_dispatch:
	inputs: null


	jobs:
	build:
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	python-version: [ "3.10" ]
	os: [ ubuntu-latest ]

	steps:
	- uses: actions/checkout@v2

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dev dependencies
	run: if [ -f requirements/requirements.txt ]; then pip install -r requirements/requirements.txt; fi

	- name: Add to the queue
	run: python metageo_pephub/main.py --target bedbase --period 2 --function run_queuer --host ${{ secrets.HOST }} --db ${{ secrets.DB }} --user ${{ secrets.USER }} --password ${{ secrets.PASSWORD }}

	- name: Add to the database
	run: python metageo_pephub/main.py --target bedbase --function run_uploader --host ${{ secrets.HOST }} --db ${{ secrets.DB }} --user ${{ secrets.USER }} --password ${{ secrets.PASSWORD }}

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