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pull updated hello_looper readme
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donaldcampbelljr committed Sep 30, 2024
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Expand Up @@ -5,14 +5,15 @@ This repository provides minimal working examples for the [looper pipeline submi
This repository contains examples

1. `/looper_csv_example` - A minimal example using _only_ csv for metadata.
2. `/pep_derived_attributes` - An basic example utilizing the PEP specification for metadata and deriving attributes from the metadata
2. `/pep_derived_attrs` - An basic example utilizing the PEP specification for metadata and deriving attributes from the metadata
3. `/pephub` - Example of how to point looper to a PEP stored on PEPhub and running a pipeline.
4. `/pipestat` - Example on how to use pipestat to report pipeline results when using looper.
4. `/pipestat_example` - Example on how to use pipestat to report pipeline results when using looper.
5. `/input_schema_example` - Example on how to use input schemas when using looper.

Each example contains:

1. A looper config file (`.looper.yaml`).
2. Sample data plus metadata in PEP format (or pointer to PEPhub).
3. A looper-compatible pipeline.

Explanation and results of running the above examples can be found at [Looper: Hello World Tutorial](https://pep.databio.org/looper/tutorial/initialize/)
Explanation and results of running the above examples can be found at [Looper: User Tutorial](https://pep.databio.org/looper/user-tutorial/initialize/)

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