re-add inspect command and information

looper/cli_pydantic.py

@@ -23,6 +23,7 @@
 import logmuse
 import pydantic2_argparse
 import yaml
+from eido import inspect_project
 from pephubclient import PEPHubClient
 from pydantic2_argparse.argparse.parser import ArgumentParser
 
@@ -288,12 +289,9 @@ def run_looper(args: TopLevelParser, parser: ArgumentParser, test_args=None):
             return Cleaner(prj)(subcommand_args)
 
         if subcommand_name == "inspect":
-            from warnings import warn
-
-            warn(
-                "The inspect feature has moved to eido."
-                "Use `eido inspect` from now on.",
-            )
+            # Inspects project from eido
+            inspect_project(p, args.sample_names, args.attr_limit)
+            # TODO add inspecting looper config: https://github.com/pepkit/looper/issues/462
 
 
 def main(test_args=None) -> None:

looper/const.py

@@ -263,7 +263,7 @@ def _get_apperance_dict(type, templ=APPEARANCE_BY_FLAG):
     "destroy": "Remove output files of the project.",
     "check": "Check flag status of current runs.",
     "clean": "Run clean scripts of already processed jobs.",
-    "inspect": "Deprecated. Use `eido inspect` instead. Print information about a project.",
+    "inspect": "Print information about a project.",
     "init": "Initialize looper config file.",
     "init-piface": "Initialize generic pipeline interface.",
     "link": "Create directory of symlinks for reported results.",

tests/smoketests/test_other.py

@@ -527,3 +527,16 @@ def test_including_toggle_attr(
         subs_list = [os.path.join(sd, f) for f in os.listdir(sd) if f.endswith(".sub")]
 
         assert len(subs_list) == 3
+
+
+@pytest.mark.skip(reason="Functionality not implemented.")
+class TestLooperInspect:
+    @pytest.mark.parametrize("cmd", ["inspect"])
+    def test_inspect_config(self, prep_temp_pep, cmd):
+        "Checks inspect command"
+        tp = prep_temp_pep
+        x = [cmd, "--looper-config", tp]
+        try:
+            results = main(test_args=x)
+        except Exception:
+            raise pytest.fail("DID RAISE {0}".format(Exception))