Bump jackson-databind from 2.9.10.1 to 2.12.7.1 in /core #24
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Bumps [jackson-databind](https://github.com/FasterXML/jackson) from 2.9.10.1 to 2.12.7.1. - [Release notes](https://github.com/FasterXML/jackson/releases) - [Commits](https://github.com/FasterXML/jackson/commits) --- updated-dependencies: - dependency-name: com.fasterxml.jackson.core:jackson-databind dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]>
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Replace Fusions with Structural Variants (not backwards compatible) * Remove support for FUSION datatype. * bug fix in TabDelimitedFileUtil.java parseInt was using Float.parseFloat and the casting to int and losing precision (string "138536968" was converted to int 138536960) * update mybatis xml (#24) * fix sv gene counts (now using unique identifier instead of stable id) * prevent double counting of sv records where SITE1 and SITE2 genes are the same * add germline to structural variant table and model * changed IS_GERMLINE to SV_STATUS * accept NULL values for SV data values * adjust mybatis mapper to work with NULL * take out ensembl check * first pass at modifying migration script to not allow fusions * change import gene panel matrix to use WGS WXS and NA placeholders * update migration step version in migrate_db * update version numbers for db * comment the core module StructuralVariant model with warnings * add support for WXS/WGS * use StableIdUtil getSample to convert sampleid before looking up in db * only add a unique set of records * update length field name and test study files * update test files * updating unique sv record * add SV changes to validator * Validate Sample IDs in SV class * fix the logic for finding cases without panel data * Add documentation for session service management Co-authored-by: Avery Wang <[email protected]> Co-authored-by: Avery Wang <[email protected]> Co-authored-by: Avery Wang <[email protected]> Co-authored-by: Gaofei Zhao <[email protected]> Co-authored-by: Gaofei Zhao <[email protected]> Co-authored-by: Karthik Kalletla <[email protected]> Co-authored-by: Manda Wilson <[email protected]> Co-authored-by: Onur Sumer <[email protected]> Co-authored-by: Robert Sheridan <[email protected]> Co-authored-by: Robert Sheridan <[email protected]> Co-authored-by: rmadupuri <[email protected]>
jagnathan
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Nov 8, 2023
Replace Fusions with Structural Variants (not backwards compatible) * Remove support for FUSION datatype. * bug fix in TabDelimitedFileUtil.java parseInt was using Float.parseFloat and the casting to int and losing precision (string "138536968" was converted to int 138536960) * update mybatis xml (#24) * fix sv gene counts (now using unique identifier instead of stable id) * prevent double counting of sv records where SITE1 and SITE2 genes are the same * add germline to structural variant table and model * changed IS_GERMLINE to SV_STATUS * accept NULL values for SV data values * adjust mybatis mapper to work with NULL * take out ensembl check * first pass at modifying migration script to not allow fusions * change import gene panel matrix to use WGS WXS and NA placeholders * update migration step version in migrate_db * update version numbers for db * comment the core module StructuralVariant model with warnings * add support for WXS/WGS * use StableIdUtil getSample to convert sampleid before looking up in db * only add a unique set of records * update length field name and test study files * update test files * updating unique sv record * add SV changes to validator * Validate Sample IDs in SV class * fix the logic for finding cases without panel data * Add documentation for session service management Co-authored-by: Avery Wang <[email protected]> Co-authored-by: Avery Wang <[email protected]> Co-authored-by: Avery Wang <[email protected]> Co-authored-by: Gaofei Zhao <[email protected]> Co-authored-by: Gaofei Zhao <[email protected]> Co-authored-by: Karthik Kalletla <[email protected]> Co-authored-by: Manda Wilson <[email protected]> Co-authored-by: Onur Sumer <[email protected]> Co-authored-by: Robert Sheridan <[email protected]> Co-authored-by: Robert Sheridan <[email protected]> Co-authored-by: rmadupuri <[email protected]>
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Bumps jackson-databind from 2.9.10.1 to 2.12.7.1.
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