+ document how to run bcftools commands from pysam #1275
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- this wasn't explicitly stated in the documentation. I was
using the notes described in [github issue 958][0] as a guide.
- in the changes also put updated links to the bcftools and htslib.org pages
[0]: pysam-developers#958
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I recently had trouble running the
bcftoolscommands within pysam. I saw the "Using samtools commands within python" section within the documentation and thought things would behave similarly. I didn't find it to be true. I ended up finding the solution through github issue 958.I thought it would be nice to have this
bcftoolsfeature more explicitly documented for future users.Let me know if any additional changes are desired.