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pysam-0.11.0
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@AndreasHeger AndreasHeger released this 12 Apr 19:41
· 940 commits to master since this release
v0.11.0
414b8fc

This release wraps the latest versions of htslib/samtools/bcftools and
implements a few bugfixes.

  • [#413] Wrap HTSlib/Samtools/BCFtools 1.4
  • [#422] Fix missing pysam.sort.usage() message
  • [#411] Fix BGZfile initialization bug
  • [#412] Add seek support for BGZFile
  • [#395] Make BGZfile iterable
  • [#433] Correct getQueryEnd
  • [#419] Export SAM enums such as pysam.CMATCH
  • [#415] Fix access by tid in AlignmentFile.fetch()
  • [#405] Writing SAM now outputs a header by default.
  • [#332] split infer_query_length(always) into infer_query_length and infer_read_length
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