Create uniprot.yml #1

	name: Check and test UniProt updates

	on:
	workflow_dispatch:
	pull_request: # tests whether it is working on PR
	paths:
	- '.github/workflows/uniprot.yml'
	schedule:
	- cron: "0 0 1,15 * *" # Run the workflow on the 1st and 15th day of each month
	permissions:
	contents: write
	pages: write
	id-token: write
	issues: write


	jobs:
	check_new_data:
	runs-on: ubuntu-latest
	name: Check the date of the latest data
	outputs:
	UNIPROT_SPROT_NEW: ${{ steps.check_download.outputs.UNIPROT_SPROT_NEW }}
	SEC_AC_NEW: ${{ steps.check_download.outputs.SEC_AC_NEW }}
	DELAC_SP_NEW: ${{ steps.check_download.outputs.DELAC_SP_NEW }}
	DATE_NEW: ${{ steps.check_download.outputs.DATE_NEW }}
	DATE_OLD: ${{ steps.check_download.outputs.DATE_OLD }}
	steps:
	# step 1: check the release date for the latest UniProt files
	- name: Checkout
	uses: actions/checkout@v4
	- name: Check for new uniprot files
	id: check_download
	run: \|
	##Extract the date from the uniprot config file
	date_old=$(grep -E '^date=' datasources/uniprot/config \| cut -d'=' -f2)
	echo 'Accessing the uniprot data'
	wget https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/complete/ -O uniprot_index.html
	less uniprot_index.html

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