Different env variable usage

sec2pri · Jan 26, 2024 · a80dd25 · a80dd25
1 parent b96e90e
commit a80dd25
Showing 1 changed file with 8 additions and 8 deletions.
diff --git a/.github/workflows/chebi.yml b/.github/workflows/chebi.yml
@@ -134,8 +134,8 @@ jobs:
 
       - name: Diff versions
         run: |
-          old=$env.ZENODO_FILE_NAME
-          new=mapping_preprocessing/datasources/chebi/data/$env.ZENODO_FILE_NAME
+          old=$ZENODO_FILE_NAME
+          new=mapping_preprocessing/datasources/chebi/data/$ZENODO_FILE_NAME
           column_name="secondaryID"
           # Extract the secondaryID column from both files and sort them
           ids_old=$(cut -f 2 "$old" | sort | tr -d "\r")
@@ -167,14 +167,14 @@ jobs:
       - uses: actions/checkout@v3
       - run: |
           echo "---" >> issue.md
-          echo "title: Update ChEBI - release on ${{ env.DATE_NEW }}" >> issue.md
+          echo "title: Update ChEBI - release on ${{ DATE_NEW }}" >> issue.md
           echo "assignees: tabbassidaloii" >> issue.md
           echo "---" >> issue.md
-          echo "[New release for ChEBI](https://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel${{ env.RELEASE }}/SDF/) available from ${{ env.DATE_NEW }}." >> issue.md
+          echo "[New release for ChEBI](https://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel${{ RELEASE }}/SDF/) available from ${{ DATE_NEW }}." >> issue.md
           echo ## Removed secondary IDs
-          echo $env.REMOVED
+          echo $REMOVED
           echo ## Added secondary IDs
-          echo $env.ADDED
+          echo $ADDED
       - uses: JasonEtco/create-an-issue@v2
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
@@ -193,10 +193,10 @@ jobs:
       - uses: actions/checkout@v3
       - run: |
           echo "---" >> issue.md
-          echo "title: Failed ChEBI processing for release ${{ env.RELEASE }}" >> issue.md
+          echo "title: Failed ChEBI processing for release ${{ RELEASE }}" >> issue.md
           echo "assignees: tabbassidaloii" >> issue.md
           echo "---" >> issue.md
-          echo "Processing failed for the [new release for ChEBI](https://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel${{ env.RELEASE }}/SDF/) available from ${{ env.DATE_NEW }}." >> issue.md
+          echo "Processing failed for the [new release for ChEBI](https://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel${{ RELEASE }}/SDF/) available from ${{ DATE_NEW }}." >> issue.md
       - uses: JasonEtco/create-an-issue@v2
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}