update-event #7

	name: Update datasources

	on:
	repository_dispatch:
	types: [update-event]
	workflow_dispatch:
	jobs:
	update-version:
	runs-on: ubuntu-latest
	steps:
	-
	name: Checkout
	uses: actions/checkout@v4
	with:
	token: ${{ secrets.PAT }}

	- name: Echo client-payload values
	run: \|
	echo "Ref: ${{ github.event.client_payload.ref }}"
	echo "SHA: ${{ github.event.client_payload.sha }}"
	echo "Datasource: ${{ github.event.client_payload.datasource }}"
	echo "Processed data: ${{ github.event.client_payload.processed_data }}"
	echo "Release number: ${{ github.event.client_payload.version }}"
	echo "Date: ${{ github.event.client_payload.date }}"


	- name: Update data files
	env:
	PAT_TOKEN: ${{ secrets.PAT }}
	run: \|
	cd inst/apps/processed_mapping_files
	artifact=$(echo ${{ github.event.client_payload.processed_data }} \| grep -oP '[^/]*$')
	curl -H "Accept: application/vnd.github+json" -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" -L -o processed_data.zip "https://api.github.com/repos/sec2pri/mapping_preprocessing/actions/artifacts/$artifact/zip"
	unzip processed_data.zip
	rm -f processed_data.zip
	ls
	cd ../../

	- name: Commit new data files
	env:
	token: ${{ secrets.PAT }}
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "OmicsFixID bot"
	git add --all
	git status
	git commit -m "Updated data" -m "Artifact URL: ${{ github.event.client_payload.datasource }}"
	git push

	#TODO - name: Update dataSourceVersion

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