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update gngs utils to get fixes to handling of unmapped, alt strand reads
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@ssadedin
ssadedin committed Oct 2, 2018
1 parent 45f15d2 commit 07b85ff
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion groovy-ngs-utils
Submodule groovy-ngs-utils updated 19 files
+3 −1 build.gradle
+78 −7 src/main/groovy/gngs/CompactReadPair.java
+2 −2 src/main/groovy/gngs/Hash.groovy
+14 −0 src/main/groovy/gngs/OverlapTracker.java
+119 −0 src/main/groovy/gngs/RegulatingActor.groovy
+62 −12 src/main/groovy/gngs/SexKaryotyper.groovy
+18 −5 src/main/groovy/gngs/Variant.groovy
+372 −0 src/main/groovy/gngs/WebService.groovy
+57 −34 src/main/groovy/gngs/coverage/CoverageCalculatorActor.groovy
+35 −55 src/main/groovy/gngs/coverage/CoverageCombinerActor.groovy
+4 −13 src/main/groovy/gngs/coverage/CoveragePrinter.groovy
+21 −0 src/main/groovy/gngs/coverage/ReadRange.java
+8 −0 src/main/groovy/gngs/pair/PairFormatter.groovy
+43 −31 src/main/groovy/gngs/pair/PairScanner.groovy
+68 −0 src/main/groovy/gngs/tools/FastQIdent.groovy
+8 −2 src/main/groovy/gngs/tools/MultiCov.groovy
+52 −10 src/main/groovy/gngs/tools/Sex.groovy
+21 −0 src/test/groovy/VariantTest.groovy
+332 −0 tests/data/test_multisample.vcf

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