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update gngs utils for speed and region calculation fixes
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@ssadedin
ssadedin committed Sep 3, 2018
1 parent 3099cc7 commit b34092b
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion groovy-ngs-utils
Submodule groovy-ngs-utils updated 17 files
+1 −1 graxxia
+25 −1 src/main/groovy/gngs/FASTQ.groovy
+14 −2 src/main/groovy/gngs/GRange.groovy
+1 −1 src/main/groovy/gngs/OrderedPairReader.groovy
+11 −4 src/main/groovy/gngs/RangeIndex.groovy
+1 −1 src/main/groovy/gngs/RefGenes.groovy
+34 −11 src/main/groovy/gngs/Regions.groovy
+7 −2 src/main/groovy/gngs/SAM.groovy
+11 −2 src/main/groovy/gngs/Utils.groovy
+251 −0 src/main/groovy/gngs/coverage/CoverageCalculatorActor.groovy
+136 −0 src/main/groovy/gngs/coverage/CoverageCombinerActor.groovy
+256 −0 src/main/groovy/gngs/coverage/CoveragePrinter.groovy
+9 −3 src/main/groovy/gngs/tools/Gaps.groovy
+87 −503 src/main/groovy/gngs/tools/MultiCov.groovy
+79 −0 src/main/groovy/gngs/tools/SplitFASTQ.groovy
+1 −1 src/main/groovy/trie/TrieQuery.groovy
+9 −9 src/test/groovy/BEDTest.groovy

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