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Pull requests: theiagen/public_health_bioinformatics

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Pull requests list

[Bakta] update to latest version full and light db
#740 opened Jan 24, 2025 by fraser-combe • Draft
4 of 11 tasks
1
[Tiptoft] Deprecate Tiptoft
#739 opened Jan 24, 2025 by MrTheronJ • Draft
2 of 11 tasks
1
[Read_Screen] Comprehensively run QC checks regardless of failure status then output results
#736 opened Jan 23, 2025 by xonq • Draft
23 of 41 tasks
1
[Documentation - Freyja] Update and revamp documentation to focus on non-SC2 organisms
#732 opened Jan 21, 2025 by cimendes Loading…
1 of 11 tasks
6
[RASUSA] update from 0.7.0 -> 2.1.0
#731 opened Jan 17, 2025 by xonq Loading…
8 of 14 tasks
1
[TheiaEuk_Illumina_PE] Update to newest gambit fungal v1.0.0
#727 opened Jan 17, 2025 by Michal-Babins Loading…
5 of 11 tasks
1
4
basespace_fetch wf improvements
#717 opened Jan 13, 2025 by kapsakcj • Draft
11 tasks
[Artic] Large overhaul for newer versions supporting clair3
#715 opened Jan 8, 2025 by Michal-Babins • Draft
5 of 11 tasks
1
[Terra2NCBI] column mapping file for tables with different column headers
#710 opened Jan 3, 2025 by fraser-combe Loading…
5 of 11 tasks
1
[New Workflow] Flye_denovo to replace DragonFlye
#692 opened Dec 13, 2024 by fraser-combe Loading…
4 of 11 tasks
3
@andrewjpage
29
[Dorado] New Dorado Basecalling Workflow Terra
#659 opened Oct 24, 2024 by fraser-combe Loading…
4 of 10 tasks
1
@andrewjpage
75
[TheiaEuk] TheiaEuk ONT Workflow
#644 opened Oct 8, 2024 by Michal-Babins • Draft
10 tasks
1
@cimendes
1
ProTip! Exclude everything labeled bug with -label:bug.