ukb_scripts

Scripts to download, process and merge ukb SNPs data using plink1.9

Run: $chmod u+rwx * $./get_data.sh

Make sure the ukb key file (.key) name is updated to your project key file name.

There is also a python script to extract phenotypes from ukb on a jupyer notebook. It uses Python3.6, pandas, numpy and multiprocessing modules. The ICD(number) codes or self-reported codes come from this study.