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[develop] Correct documentation issue and close out two issues (#1169)
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The documentation has been failing for the last week due to the https://www.ncep.noaa.gov website being unresponsive. This site URL has been replaced with https://www.weather.gov/ncep/.

The following two issues have also been addressed in this PR:

* ufs-case-studies WE2E tests fail on Derecho in get_extrn_ics/lbcs #1144 - The ufs-case-studies tests are now successfully running through get_extrn_ics/lbcs without issue.
* The default value for FV3GFS_FILE_FMT_ICS and FV3GFS_FILE_FMT_LBCS should no longer be "nemsio" #979 - The defaults for FV3GFS_FILE_FMT_ICS and FV3GFS_FILE_FMT_LBCS have been changed from nemsio to netcdf. Additionally, the WE2E test configurations that didn't include FV3GFS_FILE_FMT_ICS and FV3GFS_FILE_FMT_LBCS have had them added.
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MichaelLueken authored Jan 7, 2025
1 parent 1ee3c94 commit f04f085
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Showing 34 changed files with 74 additions and 12 deletions.
2 changes: 1 addition & 1 deletion doc/UsersGuide/Reference/Glossary.rst
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Expand Up @@ -178,7 +178,7 @@ Glossary

NCEP
National Centers for Environmental Prediction (NCEP) is an arm of the National Weather Service
consisting of nine centers. More information can be found at https://www.ncep.noaa.gov.
consisting of nine centers. More information can be found at https://www.weather.gov/ncep/.

NCEPLIBS
The software libraries created and maintained by :term:`NCEP` that are required for running
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18 changes: 9 additions & 9 deletions tests/WE2E/machine_suites/comprehensive.derecho
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@@ -1,12 +1,12 @@
#2020_CAD
#2020_CAPE
#2019_hurricane_barry
#2019_halloween_storm
#2019_hurricane_lorenzo
#2019_memorial_day_heat_wave
#2020_denver_radiation_inversion
#2020_easter_storm
#2020_jan_cold_blast
2020_CAD
2020_CAPE
2019_hurricane_barry
2019_halloween_storm
2019_hurricane_lorenzo
2019_memorial_day_heat_wave
2020_denver_radiation_inversion
2020_easter_storm
2020_jan_cold_blast
community
custom_ESGgrid
custom_ESGgrid_Central_Asia_3km
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Expand Up @@ -24,10 +24,12 @@ task_make_grid:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
DT_ATMOS: 40
LAYOUT_X: 8
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Original file line number Diff line number Diff line change
Expand Up @@ -24,10 +24,12 @@ task_make_grid:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
DT_ATMOS: 45
LAYOUT_X: 12
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Expand Up @@ -36,10 +36,12 @@ task_make_grid:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
DT_ATMOS: 100
LAYOUT_X: 6
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Expand Up @@ -30,10 +30,12 @@ task_make_grid:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
DT_ATMOS: 100
LAYOUT_X: 6
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Expand Up @@ -16,7 +16,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
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Expand Up @@ -18,10 +18,12 @@ rocoto:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 6
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
OMP_NUM_THREADS_RUN_FCST: 1
task_plot_allvars:
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Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,9 @@ rocoto:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -16,10 +16,12 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
global:
DO_SHUM: true
DO_SPPT: true
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Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -17,10 +17,12 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
WRITE_DOPOST: true
ITASKS: 2
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Expand Up @@ -18,7 +18,9 @@ rocoto:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -19,10 +19,12 @@ rocoto:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
DT_ATMOS: 180
RESTART_INTERVAL: 1 2 5
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Expand Up @@ -23,9 +23,11 @@ rocoto:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
QUILTING: false
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Expand Up @@ -18,10 +18,12 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
global:
DO_ENSEMBLE: true
NUM_ENS_MEMBERS: 2
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -15,9 +15,11 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_run_fcst:
USE_MERRA_CLIMO: true
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
Original file line number Diff line number Diff line change
Expand Up @@ -18,10 +18,12 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 6
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_make_ics:
OMP_STACKSIZE_MAKE_ICS: 2048m
task_run_fcst:
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Expand Up @@ -20,10 +20,12 @@ task_make_orog:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_make_ics:
OMP_STACKSIZE_MAKE_ICS: 2048m
task_run_fcst:
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Original file line number Diff line number Diff line change
Expand Up @@ -14,10 +14,12 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
task_make_ics:
VCOORD_FILE: "{{ user.PARMdir }}/global_hyblev_fcst_rrfsL65.txt"
task_make_lbcs:
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Expand Up @@ -14,10 +14,12 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
rocoto:
tasks:
task_make_grid:
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Expand Up @@ -19,7 +19,9 @@ workflow:
task_get_extrn_ics:
EXTRN_MDL_NAME_ICS: FV3GFS
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_ICS: nemsio
task_get_extrn_lbcs:
EXTRN_MDL_NAME_LBCS: FV3GFS
LBC_SPEC_INTVL_HRS: 3
USE_USER_STAGED_EXTRN_FILES: true
FV3GFS_FILE_FMT_LBCS: nemsio
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