bfi_restart

Script to automatically run RestartProject regularly with slurm

Instructions

Clone

Important to do this in home, and to rename the directory to make it hidden.

cd ~
git clone [email protected]:vijayvarma392/bfi_restart.git .bfi_restart

Setup Submit file based on your machine

Example, on minerva:

cd .bfi_restart
ln -s Submit_minerva.sh Submit.sh

Launch

This will stay in queue for two days, run RestartProject, relaunch itself, stay in queue for two days, and so on. So, in effect, RestartProject is run once every two days. It will also send you an email with a summary.

cd ~
sbatch -J <BFIProject> --export=ALL,EMAIL=<YOUREMAIL> .bfi_restart/Submit.sh

For example, <BFIProject>=q8_7d and <YOUREMAIL>[email protected].

So, sbatch -J q8_7d --export=ALL,[email protected] .bfi_restart/Submit.sh.

Be careful about the format!
Note: Gmail may be less reliable than academic emails. Also, use your own damn email, not mine!

Note: As with any slurm job, this can occasionally get killed.
This job should appear with jobname=<BFIProject>, so if you don't find it after a while, you may want to relaunch it.

Terminate

When you are done with the project, remove the job using scancel.
Don't forget to do this, as otherwise, it will just keep trying to restart forever!