fix: avoid double db migration for sqlite (#3244) #6175

Job	Run time
changes	3s
test-ubuntu-22.04	34m 47s
build-ubuntu-22.04	19m 36s
test-macos-13	29m 8s
build-macos-13	21m 34s
build-docker-image / docker-build-ubuntu-22.04	4m 47s
js-waku-node-optional / node	1m 19s
js-waku-node / node	6h 0m 14s
Lint	35s
	7h 52m 3s

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