Updates for recent API changes

wikipathways · Jul 16, 2024 · dd16104 · dd16104
1 parent 89eec1a
commit dd16104
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Showing 2 changed files with 10 additions and 10 deletions.
diff --git a/src/test/java/nl/unimaas/bigcat/wikipathways/curator/JUnitTests.java b/src/test/java/nl/unimaas/bigcat/wikipathways/curator/JUnitTests.java
@@ -25,7 +25,7 @@ public void performAssertions(List<IAssertion> assertions) {
 					typedAssertion.getExpectedValue(),
 					typedAssertion.getValue(),
 					typedAssertion.getMessage() +
-					(typedAssertion.hasLinkToDocs() ? (" (See " + typedAssertion.getLinkToDocs() + "). ") : "") +
+					(typedAssertion.getTest().hasLinkToDocs() ? (" (See " + typedAssertion.getTest().getLinkToDocs() + "). ") : "") +
 					". Details:\n" + typedAssertion.getDetails()
 				);
 			} else if (assertion instanceof AssertNotSame) {
@@ -34,23 +34,23 @@ public void performAssertions(List<IAssertion> assertions) {
 					typedAssertion.getExpectedValue(),
 					typedAssertion.getValue(),
 					typedAssertion.getMessage() +
-					(typedAssertion.hasLinkToDocs() ? (" (See " + typedAssertion.getLinkToDocs() + "). ") : "") +
+					(typedAssertion.getTest().hasLinkToDocs() ? (" (See " + typedAssertion.getTest().getLinkToDocs() + "). ") : "") +
 					". Details:\n" + typedAssertion.getDetails()
 				);
 			} else if (assertion instanceof AssertNotNull) {
 				AssertNotNull typedAssertion = (AssertNotNull)assertion;
 				Assertions.assertNotNull(
 					typedAssertion.getValue(),
 					typedAssertion.getMessage() +
-					(typedAssertion.hasLinkToDocs() ? (" (See " + typedAssertion.getLinkToDocs() + "). ") : "") +
+					(typedAssertion.getTest().hasLinkToDocs() ? (" (See " + typedAssertion.getTest().getLinkToDocs() + "). ") : "") +
 					". Details:\n" + typedAssertion.getDetails()
 				);
 			} else if (assertion instanceof AssertTrue) {
 				AssertTrue typedAssertion = (AssertTrue)assertion;
 				Assertions.assertTrue(
 					(boolean)typedAssertion.getValue(),
 					typedAssertion.getMessage() +
-					(typedAssertion.hasLinkToDocs() ? (" (See " + typedAssertion.getLinkToDocs() + "). ") : "") +
+					(typedAssertion.getTest().hasLinkToDocs() ? (" (See " + typedAssertion.getTest().getLinkToDocs() + "). ") : "") +
 					". Details:\n" + typedAssertion.getDetails()
 				);
 			} else {

diff --git a/src/test/java/nl/unimaas/bigcat/wikipathways/curator/References.java b/src/test/java/nl/unimaas/bigcat/wikipathways/curator/References.java
@@ -54,35 +54,35 @@ public static void loadData() throws InterruptedException {
 
 	@Test
 	public void nonNumericPubMedIDs() throws Exception {
-		performAssertions(ReferencesTests.nonNumericPubMedIDs(helper));
+		performAssertions(ReferencesTests.nonNumericPubMedIDs(helper, null));
 	}
 
 	@Test
 	@Tag("foo")
 	public void unexpectedPubMedIdentifier() throws Exception {
-		performAssertions(ReferencesTests.unexpectedPubMedIdentifier(helper));
+		performAssertions(ReferencesTests.unexpectedPubMedIdentifier(helper, null));
 	}
 
 	@Test
 	public void zeroPubMedIDs() throws Exception {
-		performAssertions(ReferencesTests.zeroPubMedIDs(helper));
+		performAssertions(ReferencesTests.zeroPubMedIDs(helper, null));
 	}
 
     @Tag("expertCuration")
     @Test
     public void atLeastOneReference() throws Exception {
-		performAssertions(ReferencesTests.atLeastOneReference(helper));
+		performAssertions(ReferencesTests.atLeastOneReference(helper, null));
     }
 
 	@Test
 	public void citesRetractedArticle() throws Exception {
-		performAssertions(ReferencesTests.citesRetractedArticle(helper));
+		performAssertions(ReferencesTests.citesRetractedArticle(helper, null));
 	}
 
 	@Test
 	@Tag("foo")
 	public void outdatedPubMedIdentifiers() throws Exception {
-		performAssertions(ReferencesTests.outdatedPubMedIdentifiers(helper));
+		performAssertions(ReferencesTests.outdatedPubMedIdentifiers(helper, null));
 	}