Update fetch_pmc.R

switch to EuropePMC
wikipathways · Jan 6, 2025 · 838950b · 838950b
1 parent 59f3347
commit 838950b
Showing 1 changed file with 3 additions and 5 deletions.
diff --git a/scripts/fetch_pmc.R b/scripts/fetch_pmc.R
@@ -232,12 +232,10 @@ if(!length(image_filename) > 0){
     write("---", yml.path, append = T)
 
     ## download image from PMC, politely
-    # img.from.path = paste0("https://www.ncbi.nlm.nih.gov/pmc/articles/",
-    #                        article.data$pmcid,
-    #                        "/bin/",article.data$image_filename)
+    img.from.path = paste0("https://europepmc.org/articles/",
+                            article.data$pmcid,
+                            "/bin/",article.data$image_filename)
 
-    img.from.path = paste0("https://www.ncbi.nlm.nih.gov/",
-                           article.data$figure_link)
     img.to.path = file.path('figures',paste(fn, "jpg", sep = "."))
     headers = c(
       `user-agent` = 'Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/102.0.5005.61 Safari/537.36'