Skip to content

Commit

Permalink
Update tsv, md and png files
Browse files Browse the repository at this point in the history
  • Loading branch information
actions-user committed Nov 19, 2024
1 parent 007f635 commit fd5dab0
Show file tree
Hide file tree
Showing 6 changed files with 161 additions and 17 deletions.
2 changes: 2 additions & 0 deletions _data/WP5493-bibliography.tsv
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
ID Database Citation
19651622 Pubmed "Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics. Pan C, Olsen JV, Daub H, Mann M. Mol Cell Proteomics. 2009 Dec;8(12):2796–808. <a href=""http://www.ncbi.nlm.nih.gov/pubmed/19651622"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/19651622"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/19651622"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
46 changes: 46 additions & 0 deletions _data/WP5493-datanodes.tsv
Original file line number Diff line number Diff line change
@@ -0,0 +1,46 @@
Label Type Identifier Comment Ensembl NCBI gene HGNC UniProt Wikidata ChEBI InChI PubChem ChemSpider HMDB KEGG LipidMaps
SPAG1 GeneProduct ncbigene:6674 "" ensembl:ENSG00000104450 ncbigene:6674 hgnc.symbol:SPAG1 uniprot:Q07617
BCR GeneProduct ncbigene:613 "" ensembl:ENSG00000186716 ncbigene:613 hgnc.symbol:BCR uniprot:P11274;uniprot:H0Y554
BCL9 GeneProduct ncbigene:607 "" ensembl:ENSG00000116128 ncbigene:607 hgnc.symbol:BCL9 uniprot:A0A804HI55;uniprot:A0A804HIV1;uniprot:A0A024QYY4;uniprot:O00512
PIK3R1 GeneProduct ncbigene:5295 "" ensembl:ENSG00000145675 ncbigene:5295 hgnc.symbol:PIK3R1 uniprot:P27986;uniprot:A0A2X0SFG1;uniprot:E5RGI8;uniprot:H0YBC2;uniprot:H0YB27;uniprot:E5RK66;uniprot:E5RJY0;uniprot:B3KWZ7;uniprot:E5RHI0
SOS1 GeneProduct ncbigene:6654 "" ensembl:ENSG00000115904 ncbigene:6654 hgnc.symbol:SOS1 uniprot:G5E9C8;uniprot:Q07889;uniprot:C9K0N6
MAPK3 GeneProduct ncbigene:5595 "" ensembl:ENSG00000102882 ncbigene:5595 hgnc.symbol:MAPK3 uniprot:B3KR49;uniprot:E9PBK7;uniprot:P27361;uniprot:E9PQW4;uniprot:H0YEX6;uniprot:E9PJF0;uniprot:L7RXH5;uniprot:E9PRH7;uniprot:H0YDH9
ABL1 GeneProduct ncbigene:25 "" ensembl:ENSG00000097007 ncbigene:25 hgnc.symbol:ABL1 uniprot:A0A024R8E2;uniprot:R4GRW0;uniprot:P00519
CRKL GeneProduct ncbigene:1399 "" ensembl:ENSG00000099942 ncbigene:1399 hgnc.symbol:CRKL uniprot:P46109
PXN GeneProduct ncbigene:5829 "" ensembl:ENSG00000089159 ncbigene:5829 hgnc.symbol:PXN uniprot:F5GZ78;uniprot:F8W0G0;uniprot:A0A1B0GWE7;uniprot:F5H836;uniprot:F8W0K8;uniprot:F8W1E0;uniprot:P49023;uniprot:A0A140VJQ8;uniprot:A0A1B0GTU4;uniprot:A0A1B0GV30;uniprot:F8VZ39;uniprot:A0A1B0GU60
GRB2 GeneProduct ncbigene:2885 "" ensembl:ENSG00000177885 ncbigene:2885 hgnc.symbol:GRB2 uniprot:P62993;uniprot:B0LPF3;uniprot:J3QRL5;uniprot:J3KT38;uniprot:J3QLF6
PIK3CA GeneProduct ncbigene:5290 "" ensembl:ENSG00000121879 ncbigene:5290 hgnc.symbol:PIK3CA uniprot:A0A2R8Y2F6;uniprot:C9JAM9;uniprot:A0A6Q8PGN9;uniprot:A0A6Q8PGV1;uniprot:C9J951;uniprot:P42336
VAV1 GeneProduct ncbigene:7409 "" ensembl:ENSG00000141968 ncbigene:7409 hgnc.symbol:VAV1 uniprot:Q96D37;uniprot:P15498;uniprot:F5H5P4;uniprot:A0A0A0MR07
ARAF GeneProduct ncbigene:369 "OCR lexicon match: RAF" ensembl:ENSG00000078061 ncbigene:369 hgnc.symbol:ARAF uniprot:A0A024R178;uniprot:P10398
BRAF GeneProduct ncbigene:673 "OCR lexicon match: RAF" ensembl:ENSG00000157764 ncbigene:673 hgnc.symbol:BRAF uniprot:A0A2R8Y492;uniprot:A0A2R8Y8E0;uniprot:H7C4S5;uniprot:A0A2R8Y467;uniprot:A0A2R8YES9;uniprot:H7C560;uniprot:A0A2U3TZI2;uniprot:P15056;uniprot:A0A2R8YDP5;uniprot:H7C5K3;uniprot:A0A2R8Y679
RAF1 GeneProduct ncbigene:5894 "OCR lexicon match: RAF" ensembl:ENSG00000132155 ncbigene:5894 hgnc.symbol:RAF1 uniprot:A0A0S2Z4L5;uniprot:P04049;uniprot:A0A0S2Z559;uniprot:A0A0B4J1W9;uniprot:H7C155;uniprot:L7RRS6
KRAS GeneProduct ncbigene:3845 "OCR lexicon match: RAS" ensembl:ENSG00000133703 ncbigene:3845 hgnc.symbol:KRAS uniprot:G3V4K2;uniprot:A0A024RAV5;uniprot:P01116;uniprot:L7RSL8;uniprot:G3V5T7
HRAS GeneProduct ncbigene:3265 "OCR lexicon match: RAS" ensembl:ENSG00000174775 ncbigene:3265 hgnc.symbol:HRAS uniprot:P01112;uniprot:A0A804HKM6;uniprot:X5D945;uniprot:A0A804HJ06;uniprot:A0A8C8MQR2
NRAS GeneProduct ncbigene:4893 "OCR lexicon match: RAS" ensembl:ENSG00000213281 ncbigene:4893 hgnc.symbol:NRAS uniprot:Q5U091;uniprot:P01111
SHC1 GeneProduct ncbigene:6464 "OCR lexicon match: SHC" ensembl:ENSG00000160691 ncbigene:6464 hgnc.symbol:SHC1 uniprot:X6R6D0;uniprot:Q5T187;uniprot:H0Y539;uniprot:Q5T181;uniprot:Q5T182;uniprot:P29353;uniprot:Q5T188
SHC2 GeneProduct ncbigene:25759 "OCR lexicon match: SHC" ensembl:ENSG00000129946 ncbigene:25759 hgnc.symbol:SHC2 uniprot:K7ENB2;uniprot:K7EKS8;uniprot:P98077
SHC3 GeneProduct ncbigene:53358 "OCR lexicon match: SHC" ensembl:ENSG00000148082 ncbigene:53358 hgnc.symbol:SHC3 uniprot:Q92529;uniprot:Q5T7I8
SHC4 GeneProduct ncbigene:399694 "OCR lexicon match: SHC" ensembl:ENSG00000185634 ncbigene:399694 hgnc.symbol:SHC4 uniprot:H0YLU6;uniprot:Q6S5L8;uniprot:F5H5M1;uniprot:H0YLZ2
GAB2 GeneProduct ncbigene:9846 "OCR lexicon match: GAB2" ensembl:ENSG00000033327 ncbigene:9846 hgnc.symbol:GAB2 uniprot:E9PJE2;uniprot:Q9UQC2;uniprot:E9PJ26
BCL2 GeneProduct ncbigene:596 "OCR lexicon match: BCL2" ensembl:ENSG00000171791 ncbigene:596 hgnc.symbol:BCL2 uniprot:A0A7I2V3S7;uniprot:P10415;uniprot:A0A024R2B3;uniprot:A0A024R2C4;uniprot:A0A7I2V5Q7;uniprot:A0A7I2V4W1;uniprot:A0A7I2V5Q9
MAP3K2 GeneProduct ncbigene:10746 "OCR lexicon match: MEKK2" ensembl:ENSG00000169967 ncbigene:10746 hgnc.symbol:MAP3K2 uniprot:Q9Y2U5;uniprot:A0A024RAH0
AKT1 GeneProduct ncbigene:207 "OCR lexicon match: AKT" ensembl:ENSG00000142208 ncbigene:207 hgnc.symbol:AKT1 uniprot:G3V3X1;uniprot:P31749;uniprot:G3V2I6;uniprot:A0A804HJM6;uniprot:B0LPE5;uniprot:A0A087WY56
AKT2 GeneProduct ncbigene:208 "OCR lexicon match: AKT" ensembl:ENSG00000105221 ncbigene:208 hgnc.symbol:AKT2 uniprot:M0QZK3;uniprot:J3QKW1;uniprot:A0A5F9ZHJ8;uniprot:E7EVP8;uniprot:J3KRI8;uniprot:C9JIJ1;uniprot:J3QLS6;uniprot:A8MX96;uniprot:C9JIF6;uniprot:A0A0A0MRF1;uniprot:J3QL45;uniprot:M0R0P9;uniprot:C9J258;uniprot:M0QZW8;uniprot:J3KTC6;uniprot:A0A1B0GXA2;uniprot:M0R275;uniprot:C9JC83;uniprot:J3KSY8;uniprot:J3KT31;uniprot:P31751;uniprot:C9JHS6;uniprot:J3KTP4;uniprot:M0R283
AKT3 GeneProduct ncbigene:10000 "OCR lexicon match: AKT" ensembl:ENSG00000117020 ncbigene:10000 hgnc.symbol:AKT3 uniprot:A0A7P0T8T9;uniprot:A0A7P0TBJ6;uniprot:A0A5F9ZHU3;uniprot:A0A7P0TB29;uniprot:Q9Y243;uniprot:A0A5F9ZHA9;uniprot:A0A5F9ZGY0;uniprot:A0A5F9ZGZ4;uniprot:A0A5K1VW74;uniprot:A0A7P0T872;uniprot:A0A7P0TB32
RPS6KA1 GeneProduct ncbigene:6195 "OCR lexicon match: RSK" ensembl:ENSG00000117676 ncbigene:6195 hgnc.symbol:RPS6KA1 uniprot:E9PMM7;uniprot:E9PPN6;uniprot:Q5SVM6;uniprot:E9PGT3;uniprot:Q15418;uniprot:E9PAN7;uniprot:A6NND1;uniprot:E9PPC1;uniprot:Q5SVM7
EIF4B GeneProduct ncbigene:1975 "OCR lexicon match: EIF4B" ensembl:ENSG00000063046 ncbigene:1975 hgnc.symbol:EIF4B uniprot:F8VX11;uniprot:F8VSC7;uniprot:E7EX17;uniprot:F8VRU1;uniprot:F8VYE9;uniprot:F8W0K0;uniprot:P23588;uniprot:F8VP89
MAPK11 GeneProduct ncbigene:5600 "" ensembl:ENSG00000185386 ncbigene:5600 hgnc.symbol:MAPK11 uniprot:F8WDP4;uniprot:Q15759
HSPB1 GeneProduct ncbigene:3315 "OCR lexicon match: HSP27" ensembl:ENSG00000106211 ncbigene:3315 hgnc.symbol:HSPB1 uniprot:A0A6Q8PGY2;uniprot:A0A6Q8PF43;uniprot:A0A6Q8PHJ6;uniprot:C9J3N8;uniprot:A0A6Q8PFK8;uniprot:P04792;uniprot:A0A6Q8PFE7;uniprot:V9HW43;uniprot:A0A6Q8PH65;uniprot:A0A6Q8PGK1;uniprot:A0A6Q8PHA6
HSPB2 GeneProduct ncbigene:3316 "OCR lexicon match: HSP27" ensembl:ENSG00000170276 ncbigene:3316 hgnc.symbol:HSPB2 uniprot:Q16082
ATF2 GeneProduct ncbigene:1386 "OCR lexicon match: ATF2" ensembl:ENSG00000115966 ncbigene:1386 hgnc.symbol:ATF2 uniprot:C9JCI8;uniprot:E9PBF9;uniprot:H7C2N6;uniprot:P15336;uniprot:B8ZZU6;uniprot:F2Z2K2;uniprot:E9PEK8
CBL GeneProduct ncbigene:867 "OCR lexicon match: CBL" ensembl:ENSG00000110395 ncbigene:867 hgnc.symbol:CBL uniprot:A0A0U1RQX8;uniprot:P22681;uniprot:A0A0U1RR39;uniprot:A0A0U1RRJ5;uniprot:A0A1B0GW38
CRK GeneProduct ncbigene:1398 "OCR lexicon match: CRK" ensembl:ENSG00000167193 ncbigene:1398 hgnc.symbol:CRK uniprot:L7RT18;uniprot:A0A0S2Z3Q4;uniprot:P46108;uniprot:I3L297;uniprot:A0A0S2Z3K9
PTK2 GeneProduct ncbigene:5747 "OCR lexicon match: FAK" ensembl:ENSG00000169398 ncbigene:5747 hgnc.symbol:PTK2 uniprot:E5RJN1;uniprot:H0YB16;uniprot:E5RIR5;uniprot:H0YBP1;uniprot:E7ESA6;uniprot:H0YB33;uniprot:H0YB99;uniprot:E5RG54;uniprot:A0A1D5RMT1;uniprot:E5RI72;uniprot:E5RJP0;uniprot:E5RGP1;uniprot:H0YBZ1;uniprot:E5RGA6;uniprot:E5RJI4;uniprot:H0YAS0;uniprot:Q05397;uniprot:E5RHK7;uniprot:E5RII9;uniprot:E9PEI4;uniprot:E5RJQ2;uniprot:E5RH48;uniprot:E5RI03;uniprot:E5RIK4;uniprot:E5RH08;uniprot:E5RI29;uniprot:E5RG86;uniprot:B4DWJ1;uniprot:E5RH01;uniprot:E5RG66;uniprot:E5RFW9;uniprot:E5RHD8;uniprot:E5RG80
BCAR1 GeneProduct ncbigene:9564 "OCR lexicon match: CAS" ensembl:ENSG00000050820 ncbigene:9564 hgnc.symbol:BCAR1 uniprot:P56945;uniprot:H3BVF0;uniprot:H3BSB2;uniprot:H3BU42;uniprot:H3BTB0;uniprot:H3BTL5;uniprot:H3BQJ7;uniprot:H3BSY4;uniprot:F5H855;uniprot:H3BN62
MEF2C GeneProduct ncbigene:4208 "OCR lexicon match: MEF2C" ensembl:ENSG00000081189 ncbigene:4208 hgnc.symbol:MEF2C uniprot:D6RCM6;uniprot:D6RG14;uniprot:A0A0D9SET2;uniprot:A0A1B0GV32;uniprot:Q06413;uniprot:A0A1B0GVI4;uniprot:D6R942;uniprot:A0A024RAL6;uniprot:A0A024RAL7;uniprot:D6RB91;uniprot:D6RJG6;uniprot:A0A0D9SGI5;uniprot:D6RC63;uniprot:D6RJA7;uniprot:A0A0D9SGF3;uniprot:A0A0D9SFD0;uniprot:D8L7E9;uniprot:A0A1B0GTW4;uniprot:A0A0R4J2G5;uniprot:A0A0D9SFV9;uniprot:D6RG21;uniprot:D6RJ95;uniprot:A0A0D9SG58
SRC GeneProduct ncbigene:6714 "OCR lexicon match: SRC" ensembl:ENSG00000197122 ncbigene:6714 hgnc.symbol:SRC uniprot:P12931
BCLAF1 GeneProduct ncbigene:9774 "OCR lexicon match: BCLAF1" ensembl:ENSG00000029363 ncbigene:9774 hgnc.symbol:BCLAF1 uniprot:E9PKI6;uniprot:E9PQN2;uniprot:Q9NYF8;uniprot:E9PJA7;uniprot:H0YF00;uniprot:H0YF14;uniprot:A0A1W2PQ43;uniprot:E9PK91;uniprot:H0YF63;uniprot:E9PK09
MAPK1 GeneProduct ncbigene:5594 "" ensembl:ENSG00000100030 ncbigene:5594 hgnc.symbol:MAPK1 uniprot:P28482;uniprot:Q1HBJ4
INPP5D GeneProduct ncbigene:3635 "" ensembl:ENSG00000168918 ncbigene:3635 hgnc.symbol:INPP5D uniprot:H7C403;uniprot:H0Y5Q9;uniprot:Q92835;uniprot:R4GMN8
DOK1 GeneProduct ncbigene:1796 "" ensembl:ENSG00000115325 ncbigene:1796 hgnc.symbol:DOK1 uniprot:Q99704;uniprot:H7C093
MAPK14 GeneProduct ncbigene:1432 "" ensembl:ENSG00000112062 ncbigene:1432 hgnc.symbol:MAPK14 uniprot:L7RSM2;uniprot:B5TY33;uniprot:Q16539;uniprot:B4E0K5;uniprot:E7EX54;uniprot:H7C4E2;uniprot:A0A024RD15
34 changes: 17 additions & 17 deletions _pathways/WP4842.md
Original file line number Diff line number Diff line change
@@ -1,27 +1,27 @@
---
annotations:
- id: CL:0000216
parent: native cell
type: Cell Type Ontology
value: Sertoli cell
- id: DOID:1414
type: Disease Ontology
value: ovarian dysfunction
- id: PW:0000003
parent: signaling pathway
type: Pathway Ontology
value: signaling pathway
- id: DOID:1414
type: Disease Ontology
value: ovarian dysfunction
- id: DOID:1923
type: Disease Ontology
value: disorder of sexual development
- id: DOID:1876
parent: disease of mental health
type: Disease Ontology
value: sexual dysfunction
- id: CL:0000501
parent: animal cell
type: Cell Type Ontology
value: granulosa cell
- id: CL:0000216
parent: native cell
type: Cell Type Ontology
value: Sertoli cell
- id: DOID:1876
parent: disease of mental health
type: Disease Ontology
value: sexual dysfunction
- id: DOID:1923
type: Disease Ontology
value: disorder of sexual development
authors:
- WoltersAAT1804
- Fehrhart
Expand Down Expand Up @@ -59,15 +59,15 @@ description: 'Multiple genes in the genital ridge are of importance for the form
in itself is stimulated by NR5A1 and also stimulates the formation of 5-dihydrotestosterone
(DHT). The stimulation of DHT is catalysed by SRD5A1. These factors together induce
the formation of internal and external male genitalia. '
last-edited: 2024-07-26
last-edited: 2024-11-19
ndex: 93cc5f51-8b6e-11eb-9e72-0ac135e8bacf
organisms:
- Homo sapiens
redirect_from:
- /index.php/Pathway:WP4842
- /instance/WP4842
- /instance/WP4842_r134660
revision: r134660
- /instance/WP4842_r135851
revision: r135851
schema-jsonld:
- '@context': https://schema.org/
'@id': https://wikipathways.github.io/pathways/WP4842.html
Expand Down
96 changes: 96 additions & 0 deletions _pathways/WP5493.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,96 @@
---
annotations:
- id: PW:0000298
parent: signaling pathway
type: Pathway Ontology
value: altered growth factor signaling pathway
- id: PW:0000706
parent: disease pathway
type: Pathway Ontology
value: leukemia pathway
authors:
- Khanspers
citedin: ''
communities: []
description: 'Effect of dasatinib on the BCR-ABL signaling pathway, showing phosphorylation
sites that were found to be suppressed by Dasatinib are shown (Pan et al). Key signaling
events in the three major MAPK cascades were suppressed, including the activation
loop phosphorylation sites of p38α/β (MAPK11) and ERK1/2 (MAPK1/MAPK3). Based on
fig 6 from https://pmc.ncbi.nlm.nih.gov/articles/PMC2816010/Phosphorylation site
information is based on the left-side panel in the figure; not all sites could be
verified in independent sources (e.g. PhosphositePlus). '
last-edited: 2024-11-19
ndex: null
organisms:
- Homo sapiens
redirect_from:
- /index.php/Pathway:WP5493
- /instance/WP5493
- /instance/WP5493_r135850
revision: r135850
schema-jsonld:
- '@context': https://schema.org/
'@id': https://wikipathways.github.io/pathways/WP5493.html
'@type': Dataset
creator:
'@type': Organization
name: WikiPathways
description: 'Effect of dasatinib on the BCR-ABL signaling pathway, showing phosphorylation
sites that were found to be suppressed by Dasatinib are shown (Pan et al). Key
signaling events in the three major MAPK cascades were suppressed, including the
activation loop phosphorylation sites of p38α/β (MAPK11) and ERK1/2 (MAPK1/MAPK3). Based
on fig 6 from https://pmc.ncbi.nlm.nih.gov/articles/PMC2816010/Phosphorylation
site information is based on the left-side panel in the figure; not all sites
could be verified in independent sources (e.g. PhosphositePlus). '
keywords:
- ' PIK3CA'
- ' PIK3R1'
- ABL1
- AKT1
- AKT2
- AKT3
- ARAF
- ATF2
- BCAR1
- BCL2
- BCL9
- BCLAF1
- BCR
- BRAF
- CBL
- CRK
- CRKL
- DOK1
- EIF4B
- GAB2
- GRB2
- HRAS
- HSPB1
- HSPB2
- INPP5D
- KRAS
- MAP3K2
- MAPK1
- MAPK11
- MAPK14
- MAPK3
- MEF2C
- NRAS
- PTK2
- PXN
- RAF1
- RPS6KA1
- SHC1
- SHC2
- SHC3
- SHC4
- SOS1
- SPAG1
- SRC
- VAV1
license: CC0
name: Effect of dasatinib on the BCR-ABL signaling pathway
seo: CreativeWork
title: Effect of dasatinib on the BCR-ABL signaling pathway
wpid: WP5493
---
Binary file modified assets/img/WP4842/WP4842-thumb.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added assets/img/WP5493/WP5493-thumb.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.

0 comments on commit fd5dab0

Please sign in to comment.