build: Update CIBW_BEFORE_ALL command #254
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| name: Release | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| jobs: | |
| release: | |
| name: Check Version | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out the repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Upgrade pip | |
| run: | | |
| pip install --constraint=.github/workflows/constraints.txt pip | |
| pip --version | |
| - name: Install Poetry | |
| run: | | |
| pip install --constraint=.github/workflows/constraints.txt poetry | |
| poetry --version | |
| - name: Build sdist | |
| run: | | |
| poetry build --format=sdist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: dist/*.tar.gz | |
| - name: Check if there is a parent commit | |
| id: check-parent-commit | |
| run: | | |
| echo "sha=$(git rev-parse --verify --quiet HEAD^)" >> $GITHUB_OUTPUT | |
| - name: Detect and tag new version | |
| id: check-version | |
| if: steps.check-parent-commit.outputs.sha | |
| uses: salsify/[email protected] | |
| with: | |
| version-command: | | |
| bash -o pipefail -c "poetry version | awk '{ print \$2 }'" | |
| - name: Bump version for developmental release | |
| if: "! steps.check-version.outputs.tag" | |
| run: | | |
| poetry version patch && | |
| version=$(poetry version | awk '{ print $2 }') && | |
| poetry version $version.dev.$(date +%s) | |
| build_wheels_linux: | |
| name: "${{ matrix.os }} ${{ matrix.cibw_archs }} ${{ matrix.cibw_build }}" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| # cibw_build: ["cp39-*", "cp310-*", "cp311-*"] | |
| cibw_build: ["cp39-*", "cp310-*"] | |
| cibw_archs: ["x86_64"] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up QEMU | |
| if: matrix.cibw_archs != 'x86_64' | |
| uses: docker/setup-qemu-action@v2 | |
| with: | |
| platforms: all | |
| - name: Set up python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: false | |
| virtualenvs-in-project: false | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| env: | |
| # CIBW_BEFORE_ALL: yum install -y openssl-devel zlib-devel bzip2-devel xz-devel && curl -L https://github.com/samtools/htslib/releases/download/1.18/htslib-1.18.tar.bz2 | tar xj && cd htslib-1.18 && ./configure && make && make install | |
| CIBW_BEFORE_ALL: (yum install -y openssl-devel zlib-devel bzip2-devel xz-devel && curl -L https://github.com/samtools/htslib/releases/download/1.18/htslib-1.18.tar.bz2 | tar xj && cd htslib-1.18 && ./configure && make && make install || apt-get update && apt-get install -q --no-install-recommends --no-install-suggests libhts-dev libssl-dev) | |
| CIBW_ARCHS: ${{ matrix.cibw_archs }} | |
| CIBW_BUILD: ${{ matrix.cibw_build }} | |
| # CIBW_TEST_REQUIRES: pytest | |
| # CIBW_TEST_COMMAND: pytest {package}/tests | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: wheelhouse/*.whl | |
| # build_wheels_macos: | |
| # name: "${{ matrix.os }} ${{ matrix.cibw_archs }} ${{ matrix.cibw_build }}" | |
| # runs-on: ${{ matrix.os }} | |
| # strategy: | |
| # fail-fast: false | |
| # matrix: | |
| # os: [macos-latest] | |
| # cibw_build: ["cp39-*", "cp310-*", "cp311-*", "cp312-*"] | |
| # cibw_archs: ["x86_64"] | |
| # env: | |
| # SYSTEM_VERSION_COMPAT: 0 # https://github.com/actions/setup-python/issues/469#issuecomment-1192522949 | |
| # steps: | |
| # - name: Check out repository | |
| # uses: actions/checkout@v3 | |
| # with: | |
| # fetch-depth: 0 | |
| # - name: Set up python 3.12 | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: "3.12" | |
| # - name: Install poetry | |
| # uses: snok/install-poetry@v1 | |
| # with: | |
| # virtualenvs-create: false | |
| # virtualenvs-in-project: false | |
| # - name: Configure Homebrew | |
| # uses: Homebrew/actions/setup-homebrew@master | |
| # - name: Install Dependencies | |
| # env: | |
| # HOMEBREW_NO_AUTO_UPDATE: 1 | |
| # HOMEBREW_NO_INSTALL_CLEANUP: 1 # Do not run brew cleanup automatically. | |
| # HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: 1 # Do not automatically update packages. | |
| # run: | | |
| # brew install htslib | |
| # brew install openssl@3 | |
| # ln -sf $(brew --prefix openssl)/include/openssl /usr/local/include/openssl | |
| # ln -sf $(brew --prefix openssl)/lib/*a /usr/local/lib/ | |
| # ln -sf $(brew --prefix openssl)/lib/*dylib /usr/local/lib/ | |
| # - name: Build wheels | |
| # uses: pypa/[email protected] | |
| # env: | |
| # CIBW_ARCHS: ${{ matrix.cibw_archs }} | |
| # CIBW_BUILD: ${{ matrix.cibw_build }} | |
| # CIBW_TEST_REQUIRES: pytest | |
| # CIBW_TEST_COMMAND: pytest {package}/tests | |
| # - uses: actions/upload-artifact@v3 | |
| # with: | |
| # path: wheelhouse/*.whl | |
| upload_to_pypi: | |
| needs: ["release", "build_wheels_linux"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| - name: Publish package on PyPI | |
| if: needs.release.check-version.outputs.tag | |
| uses: pypa/[email protected] | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_TOKEN }} | |
| skip_existing: true | |
| packages_dir: artifact/ | |
| - name: Publish package on TestPyPI | |
| if: "! needs.release.check-version.outputs.tag" | |
| uses: pypa/[email protected] | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.TEST_PYPI_TOKEN }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| skip_existing: true | |
| packages_dir: artifact/ | |
| - name: Publish the release notes | |
| uses: release-drafter/[email protected] | |
| with: | |
| publish: ${{ steps.check-version.outputs.tag != '' }} | |
| tag: ${{ steps.check-version.outputs.tag }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |