Fix Conda directive is not honoured by task array (#5704)

Signed-off-by: Paolo Di Tommaso <[email protected]> Signed-off-by: Ben Sherman <[email protected]> Co-authored-by: Ben Sherman <[email protected]>
nextflow-io · Jan 23, 2025 · f8c3b63 · f8c3b63
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diff --git a/docs/reference/process.md b/docs/reference/process.md
@@ -351,6 +351,10 @@ For cloud-based executors like AWS Batch, or when using Fusion with any executor
 - {ref}`process-container`
 - {ref}`process-containerOptions`
 
+When using Wave, the following additional directives must be uniform:
+
+- {ref}`process-conda`
+
 (process-beforescript)=
 
 ### beforeScript

diff --git a/modules/nextflow/src/main/groovy/nextflow/processor/TaskArrayCollector.groovy b/modules/nextflow/src/main/groovy/nextflow/processor/TaskArrayCollector.groovy
@@ -55,6 +55,8 @@ class TaskArrayCollector {
             // only needed for container-native executors and/or Fusion
             'container',
             'containerOptions',
+            // only needed when using Wave
+            'conda',
     ]
 
     private TaskProcessor processor