Add nf-test sharding CI #30
Triggered via pull request
October 11, 2024 07:16
maxulysse
Status
Cancelled
Total duration
9m 57s
Artifacts
–
pytest.yml
on: pull_request
Check for changes (pytest)
5s
Matrix: pytest
confirm-pass
0s
Annotations
10 errors and 2 warnings
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concatenate_vcfs docker NF 24.04.2
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 07:19:55 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 07:20:33 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 07:21:07 GMT+0000 (Coordinated Universal Time)
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concatenate_vcfs docker NF latest-everything
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 07:21:52 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 07:22:25 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 07:22:55 GMT+0000 (Coordinated Universal Time)
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vep docker NF latest-everything
Canceling since a higher priority waiting request for 'pytest-workflow-1668' exists
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intervals docker NF latest-everything
Canceling since a higher priority waiting request for 'pytest-workflow-1668' exists
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mutect2 docker NF latest-everything
Canceling since a higher priority waiting request for 'pytest-workflow-1668' exists
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mutect2 docker NF 24.04.2
Canceling since a higher priority waiting request for 'pytest-workflow-1668' exists
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alignment_from_everything docker NF latest-everything
Canceling since a higher priority waiting request for 'pytest-workflow-1668' exists
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vep docker NF 24.04.2
Canceling since a higher priority waiting request for 'pytest-workflow-1668' exists
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intervals docker NF 24.04.2
Canceling since a higher priority waiting request for 'pytest-workflow-1668' exists
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merge docker NF latest-everything
Canceling since a higher priority waiting request for 'pytest-workflow-1668' exists
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concatenate_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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concatenate_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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