Sarek bcftools normalization #107
maxulyssepytest.yml
on: pull_request
Check for changes (pytest)
3s
Matrix: pytest
confirm-pass
4s
Annotations
7 errors and 4 warnings
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normalize_vcfs docker NF 24.04.2
Process returned exit code 5
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 14:10:44 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 14:10:45 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 14:10:46 GMT+0000 (Coordinated Universal Time)
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normalize_vcfs docker NF 24.04.2
Process completed with exit code 1.
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normalize_vcfs docker NF latest-everything
Process returned exit code 5
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 14:11:53 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 14:11:54 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 14:11:55 GMT+0000 (Coordinated Universal Time)
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normalize_vcfs docker NF latest-everything
Process completed with exit code 1.
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concatenate_vcfs docker NF latest-everything
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 14:12:43 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 14:12:50 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 14:12:57 GMT+0000 (Coordinated Universal Time)
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concatenate_vcfs docker NF 24.04.2
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 14:13:27 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 14:13:36 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 14:13:43 GMT+0000 (Coordinated Universal Time)
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confirm-pass
Process completed with exit code 1.
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normalize_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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normalize_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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concatenate_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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concatenate_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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