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Sarek bcftools normalization #108

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Sarek bcftools normalization

Sarek bcftools normalization #108

Triggered via pull request November 5, 2024 07:13
@Patricie34Patricie34
synchronize #1682
Patricie34:sarek_bcftools_norm
Status Failure
Total duration 4m 28s
Artifacts –

pytest.yml

on: pull_request
Check for changes (pytest)
3s
Check for changes (pytest)
Matrix: pytest
confirm-pass
1s
confirm-pass
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7 errors and 4 warnings
normalize_vcfs docker NF 24.04.2
Process returned exit code 5 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 07:16:04 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 07:16:05 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 07:16:06 GMT+0000 (Coordinated Universal Time)
normalize_vcfs docker NF 24.04.2
Process completed with exit code 1.
concatenate_vcfs docker NF 24.04.2
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 07:16:08 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 07:16:16 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 07:16:23 GMT+0000 (Coordinated Universal Time)
concatenate_vcfs docker NF latest-everything
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 07:16:28 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 07:16:36 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 07:16:43 GMT+0000 (Coordinated Universal Time)
normalize_vcfs docker NF latest-everything
Process returned exit code 5 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 07:17:26 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 07:17:28 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 07:17:29 GMT+0000 (Coordinated Universal Time)
normalize_vcfs docker NF latest-everything
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
normalize_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
concatenate_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
concatenate_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
normalize_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.