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Use original QC values for Deepvariant after BQSR #132

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Use original QC values for Deepvariant after BQSR

Use original QC values for Deepvariant after BQSR #132

Triggered via pull request November 15, 2024 21:07
@FriederikeHanssenFriederikeHanssen
synchronize #1733
FriederikeHanssen:issue_682
Status Failure
Total duration 4m 23s
Artifacts –

pytest.yml

on: pull_request
Check for changes (pytest)
4s
Check for changes (pytest)
Matrix: pytest
confirm-pass
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3 errors and 2 warnings
deepvariant docker NF 24.04.2
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 21:11:13 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 21:11:26 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 21:11:38 GMT+0000 (Coordinated Universal Time)
deepvariant docker NF latest-everything
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 21:11:14 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 21:11:26 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 21:11:37 GMT+0000 (Coordinated Universal Time)
confirm-pass
Process completed with exit code 1.
deepvariant docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
deepvariant docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.