Skip to content
pytest-workflow

Sarek bcftools normalization #152

Sign in to view logs

Sarek bcftools normalization

Sarek bcftools normalization #152

Triggered via pull request November 28, 2024 09:30
@Patricie34Patricie34
synchronize #1682
Patricie34:sarek_bcftools_norm
Status Failure
Total duration 6m 26s
Artifacts –

pytest.yml

on: pull_request
Check for changes (pytest)
6s
Check for changes (pytest)
Matrix: pytest
confirm-pass
3s
confirm-pass
Fit to window
Zoom out
Zoom in

Annotations

9 errors and 4 warnings
concatenate_vcfs docker NF 24.04.2
Process returned exit code 2 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:34:04 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:34:05 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:34:06 GMT+0000 (Coordinated Universal Time)
concatenate_vcfs docker NF 24.04.2
Process completed with exit code 1.
normalize_vcfs docker NF 24.04.2
Process returned exit code 2 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:34:05 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:34:06 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:34:07 GMT+0000 (Coordinated Universal Time)
normalize_vcfs docker NF 24.04.2
Process completed with exit code 1.
concatenate_vcfs docker NF latest-everything
Process returned exit code 2 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:35:28 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:35:29 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:35:30 GMT+0000 (Coordinated Universal Time)
concatenate_vcfs docker NF latest-everything
Process completed with exit code 1.
normalize_vcfs docker NF latest-everything
Process returned exit code 2 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:36:59 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:37:01 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:37:02 GMT+0000 (Coordinated Universal Time)
normalize_vcfs docker NF latest-everything
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
concatenate_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
normalize_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
concatenate_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
normalize_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.