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Sarek bcftools normalization #153

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Sarek bcftools normalization

Sarek bcftools normalization #153

Triggered via pull request November 28, 2024 11:47
@Patricie34Patricie34
synchronize #1682
Patricie34:sarek_bcftools_norm
Status Cancelled
Total duration 2h 44m 41s
Artifacts –

pytest.yml

on: pull_request
Check for changes (pytest)
7s
Check for changes (pytest)
Matrix: pytest
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4 errors and 3 warnings
normalize_vcfs docker NF latest-everything
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:50:42 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:57:04 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:00:20 GMT+0000 (Coordinated Universal Time)
concatenate_vcfs docker NF 24.04.2
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:50:52 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:57:18 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:00:38 GMT+0000 (Coordinated Universal Time)
normalize_vcfs docker NF 24.04.2
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:51:12 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:58:00 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:01:21 GMT+0000 (Coordinated Universal Time)
concatenate_vcfs docker NF latest-everything
Canceling since a higher priority waiting request for 'pytest-workflow-1682' exists
normalize_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
concatenate_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
normalize_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.