added indexcov : finding large INDEL using the BAI index #207

Job	Run time
Check for changes (pytest)	4s
cnvkit docker NF 24.04.2	14m 3s
cnvkit docker NF latest-everything	13m 23s
deepvariant docker NF 24.04.2	7m 29s
deepvariant docker NF latest-everything	7m 14s
freebayes docker NF 24.04.2	18m 34s
freebayes docker NF latest-everything	18m 36s
haplotypecaller docker NF 24.04.2	8m 41s
haplotypecaller docker NF latest-everything	8m 22s
haplotypecaller_skip_filter docker NF 24.04.2	5m 31s
haplotypecaller_skip_filter docker NF latest-everything	5m 32s
joint_germline docker NF 24.04.2	8m 58s
manta docker NF 24.04.2	11m 42s
manta docker NF latest-everything	10m 48s
mpileup docker NF 24.04.2	10m 48s
mpileup docker NF latest-everything	9m 5s
msisensorpro docker NF 24.04.2	5m 40s
msisensorpro docker NF latest-everything	5m 18s
mutect2 docker NF 24.04.2	12m 52s
mutect2 docker NF latest-everything	12m 54s
tiddit docker NF 24.04.2	8m 42s
tiddit docker NF latest-everything	8m 59s
concatenate_vcfs docker NF 24.04.2	9m 4s
concatenate_vcfs docker NF latest-everything	11m 2s
confirm-pass	1s
	3h 53m 22s

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