Verify the installation

Create a test job in SMRT Portal using canned installation data:

Open your web browser and clear the browser cache:

• Google Chrome: Choose Tools > Clear browsing data. Choose the beginning of time from the droplist, then check Empty the cache and click Clear browsing data.
• Internet Explorer: Choose Tools > Internet Options > General, then under Browsing history, click Delete. Check Temporary Internet files, then click Delete.
• Firefox: Choose Tools > Options > Advanced, then click the Network tab. In the Cached Web Content section, click Clear Now.

2. Refresh the current page by pressing F5.
3. Log into SMRT Portal by navigating to http://HOST:PORT/smrtportal.
4. Click Design Job.
5. Click Import and Manage.
6. Click Import SMRT Cells.
7. Click Add.
8. Enter /opt/smrtanalysis/common/test/primary, then click OK.
9. Select the new path and click Scan. You should get a dialog saying “One input was scanned." Note: If you are upgrading to v1.4.0, this cell will already have been imported into your system. In addition, the input was downsampled to speed the test and reduce the overall tarball size.
10. Click Design Job.
11. Click Create New.
12. Enter a job name and comment.
13. Select the protocol RS_Resequencing.1.
14. Under SMRT Cells Available, select a lambda cell and click the right-arrow button.
15. Click Save on the bottom right, then click Start. The job should complete successfully.
16. Click the SMRT View button. SMRT View should open with tracks displayed, and the reads displayed in the Details panel.